ESPE Abstracts (2024) 98 RFC3.2

ESPE2024 Rapid Free Communications Pituitary, Neuroendocrinology and Puberty 1 (6 abstracts)

Results from a targeted hypopituitarism gene panel in patients with variable congenital hypopituitarism identifies variants in known and novel candidate genes.

Louise Gregory & Mehul Dattani


UCL Great Ormond Street Institute of Child Health, London, United Kingdom


Background: Correct hypothalamo-pituitary (HP) formation is dependent on a complex network of numerous transcription factors and signalling molecules. Congenital hypopituitarism (CH) is a highly variable disorder involving deficiencies in one or more of the 7 pituitary hormones, and is often associated with syndromic features, spanning visual, midline brain, and facial abnormalities.

Methods: We used a targeted gene panel including 135 genes: a) known CH-related genes, b) novel genes identified through previous NGS data, and c) genes implicated in murine HP development not previously investigated in humans. We ran 144 samples from a large CH patient cohort (n = >1900) from our hospital and other national/international centres on this targeted gene panel, using stringent variant filtering criteria. Patient phenotypes included growth hormone deficiency (GHD), hypogonadotropic hypogonadism (HH), combined pituitary hormone deficiency (CPHD) and septo-optic dysplasia (SOD).

Results: Revealed a total of 226 variants in 108/144 patients; including known pathogenic variants and variants of unknown significance, incorporating 218 different variants. There were a total of 84/218 novel variants across all genes screened, and 16/84 of these occurred in novel CH candidate genes. Examples of our overall findings are presented in this table:

Gene Known CH-related or novel candidate gene? Variant Variant: novel or present in gnomAD? Patient phenotype
PNPLA6 Known Hom p.Arg693Leu Novel CPHD
GLI2 Known Hom p.Ser690fsTer5 Novel Hypopituitarism, polydactyly, ONH
GLI2 Known Het p.Val122Met × 10 on gnomAD Hypopituitarism
LHX4 Known Het p.Glu212fsTer4 Novel CPHD, EPP
CHD7 Known Het p.Arg1743Cys Novel HH
TCF7L1 Known Hom c.40_42delGGC, p.Gly14del Novel CPHD
POLR3A Novel candidate Het p.Glu413Lys Novel Hypopituitarism, EPP
IFT88 Novel candidate Het p.Thr333Ile × 2 on gnomAD Hypopituitarism
DHX38 Novel candidate Het p.Glu96Val Novel SOD
RAI1 Novel candidate Hom p.Ala57Thr Novel Hypopituitarism
ONH, optic nerve hypoplasia; EPP, ectopic posterior pituitary.

There were 15 cases involving variants in known CH-related genes that do not require further functional investigation and may be considered as genetically ‘solved’. Data suggest an oligogenic basis in many of these cases, with the involvement of multiple genes in the pathogenicity of the disease. Novel variants are currently undergoing functional characterization. These data have provided a molecular diagnosis for many of these patients, which will lead to improved genetic counselling and long-term care for patients and their families.

Volume 98

62nd Annual ESPE (ESPE 2024)

Liverpool, UK
16 Nov 2024 - 18 Nov 2024

European Society for Paediatric Endocrinology 

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